projects

A growing collection of projects

data

Neurocyte

A cost-effective serverless AWS ETL pipeline

neuroscience

Deep Learning for the Diagnosis and Classification of Rett Syndrome

Classification of stem cell derived Rett syndrome neuronal networks.

Burst Reverberation Toolbox

Production implementation of burst reverberation toolbox. Packages a data pipeline (that applies unsupervised learning, regression techniques, and feature generators) into a desktop GUI for use by non-coding research scientists.

Neural Statistics Compiler for Automated Analysis of Multielectrode Array (MEA) Data

Simple to use GUI for the automated analysis of multielectrode array for non-coding research scientists to use. Avoids manual error in compiling statistics and expedites preliminary analysis.

MaxInterval Burst Detection Algorithm (Python/Matlab)

Detects single electrode spike train bursts based on 5 parameters. Currently implemented in Python and Matlab.

Spiking Time Tiling Coefficient - Pairwise correlations between spike trains

How to load data, calculate STTC, and then visualize correlation matrix in various formats

Tutorial - Non-Reverberating (i.e., Network Burst) Detection Workflow

A breakdown of how RSB detection code works on non-reverberating networks.

Tutorial - Reverberating Super Burst Detection Workflow

A breakdown of how RSB detection and analysis works.

Plot your brain MRI

How to plot OBJ files in Plotly

fun